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wikipathways

pipeworx.ioInfrastructure

No liveness check has reached it yet; it has been in the index since 10 Oct 2026. How this is checked

WikiPathways MCP Server exposes JSON-RPC tools for searching pathways, listing pathways by organism, and retrieving pathway metadata and viewer links. It connects AI agents and developer applications to the public WikiPathways biological pathway database.

Inferred · not functionally tested

FreeWebAPICloud-managed
wikipathways preview
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Overview

6 features

Purpose: Accessing and querying WikiPathways biological pathway data from AI agents and applications.

Inferred · not functionally tested

Audience: developers and researchers building AI-powered biology tools

Inferred · not functionally tested

Functions: data_extraction

Inferred · not functionally tested

Interfaces: API: indicated (inferred, not tested) · MCP: indicated (inferred, not tested) · CLI: unknown · Self-hosting: unknown

Recorded constraints: pricing: free · license: Proprietary · platforms: WEB · deployment: browser, api_only, cloud_managed

Constraint provenance is unknown; confirm requirements with the publisher.

Record sources: gateway.pipeworx.io. These links do not verify the individual claims.

wikipathways is a Frameworks & runtimes project. Inferred · not functionally tested: It focuses on accessing and querying WikiPathways biological pathway data from AI agents and applications. Inferred · not functionally tested: wikipathways is a B2B product aimed at developers and researchers building AI-powered biology tools. Basis unknown · not verified: wikipathways is free to use. Basis unknown · not verified: wikipathways is available on the web and API.

It is developed by Pipeworx. Inferred · not functionally tested: Among its 6 catalogued features are pathway search, organism filtering, and pathway listing. Inferred · not functionally tested: Catalogued interfaces include an MCP server.

Summary written by a language model from the project’s public pages.

Tasks: Inferred · not functionally tested

  • Pathway search
  • Organism filtering
  • Pathway listing
  • Pathway metadata
  • Viewer links
  • JSON-RPC endpoint

Topics: Inferred · not functionally tested

Tags
biological-pathwayslife-sciences-datamcp-serverpathway-search

JSON profile · Text profile · Access guide

Built with & integrations

Hosting
Cloudflare
Connectors
MCP
Runs on
BrowserAPI-onlyCloud-managed
Detected from
Cloudflare
cf-ray header

Trust & compliance

Public signals
HTTPSFree tier

Indexing history

1

What PulseGate has recorded for this listing

  1. Indexed10 Oct · 03:02 UTC
    Wikipathways seen via MCP Registry (official)
    Source: MCP Registry (official) · Open

Frequently asked questions about wikipathways

What does wikipathways do?
Inferred · not functionally tested: Wikipathways focuses on accessing and querying WikiPathways biological pathway data from AI agents and applications. It is catalogued under Frameworks & runtimes on PulseGate.
Who should use wikipathways?
Inferred · not functionally tested: wikipathways is a B2B product built for developers and researchers building AI-powered biology tools.
Does wikipathways have a free plan?
Basis unknown · not verified: Yes — wikipathways is free to use.
What platforms does wikipathways run on?
Basis unknown · not verified: wikipathways runs on the web and API.
Is wikipathways still active?
Unverified. wikipathways has not been re-checked since it entered the index, so there is no finding either way — and only a positive finding would say otherwise.
What are alternatives to wikipathways?
Similar projects tracked by PulseGate include reactome, wikipedia, and wikidata.reactomewikipediawikidata
Who develops wikipathways?
wikipathways is developed by Pipeworx.
Does wikipathways have an API or integrations?
Inferred · not functionally tested: Yes — wikipathways exposes an MCP server.

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