proteomics-mcp
No liveness check has reached it yet; it is registered on GitHub and PyPI and has been in the index since 12 Oct 2026. How this is checked
proteomics-mcp is an MIT-licensed Python package that exposes spectrum-level proteomics scoring tools through a command-line interface and MCP. It is intended for proteomics researchers and developers working with mass spectrometry and peptide-spectrum matches.
Inferred · not functionally tested
Overview
5 featuresPurpose: Running spectrum-level proteomics scoring and peptide-spectrum matching workflows from developer tools.
Inferred · not functionally tested
Audience: proteomics researchers and bioinformatics developers
Inferred · not functionally tested
Functions: data_extraction
Inferred · not functionally tested
Interfaces: API: indicated (inferred, not tested) · MCP: indicated (inferred, not tested) · CLI: indicated (inferred, not tested) · Self-hosting: indicated (inferred, not tested)
Recorded constraints: pricing: open_source · license: MIT · platforms: CLI · deployment: cli, api_only, self_hosted
Constraint provenance is unknown; confirm requirements with the publisher.
Record sources: pypi.org · github.com. These links do not verify the individual claims.
proteomics-mcp sits in PulseGate's CLI tools & terminal category. Inferred · not functionally tested: It focuses on running spectrum-level proteomics scoring and peptide-spectrum matching workflows from developer tools. Inferred · not functionally tested: proteomics-mcp is an open-source project aimed at proteomics researchers and bioinformatics developers. Basis unknown · not verified: proteomics-mcp is open source under the MIT license. Basis unknown · not verified: proteomics-mcp is available on the command line and API, and it can be self-hosted.
It is developed by UadKLab, and it first shipped in 2026. The project is developed in the open on GitHub with 11 commits in the last 90 days. Inferred · not functionally tested: Key capabilities include spectrum scoring, peptide matching, and mass spectrometry. Inferred · not functionally tested: Catalogued interfaces include an MCP server.
Summary written by a language model from the project’s public pages.
Tasks: Inferred · not functionally tested
- Spectrum scoring
- Peptide matching
- Mass spectrometry
- CLI interface
- MCP interface
Topics: Inferred · not functionally tested
Built with & integrations
- Claude Code
- commit 085c5bb33593 · since Oct 2026
Trust & compliance
Indexing history
1What PulseGate has recorded for this listing
- Indexed12 Oct · 15:44 UTCproteomics-mcp seen via PyPI Bulk EnumeratorSource: PyPI Bulk Enumerator · Open
Frequently asked questions about proteomics-mcp
- What does proteomics-mcp do?
- Inferred · not functionally tested: Proteomics-mcp focuses on running spectrum-level proteomics scoring and peptide-spectrum matching workflows from developer tools. It is catalogued under CLI tools & terminal on PulseGate.
- Who should use proteomics-mcp?
- Inferred · not functionally tested: proteomics-mcp is an open-source project built for proteomics researchers and bioinformatics developers.
- Does proteomics-mcp have a free plan?
- Basis unknown · not verified: Yes — proteomics-mcp is open source under the MIT license and free to use.
- What platforms does proteomics-mcp run on?
- Basis unknown · not verified: proteomics-mcp runs on the command line and API. It can also be self-hosted.
- Is proteomics-mcp still active?
- The GitHub repository shows 11 commits in the last 90 days.
- What are alternatives to proteomics-mcp?
- Similar projects tracked by PulseGate include mcpscore, mcp-mcts, and Genomics MCP.mcpscoremcp-mctsGenomics MCP
- Who develops proteomics-mcp?
- proteomics-mcp is developed by UadKLab.
- When did proteomics-mcp launch?
- proteomics-mcp first shipped in 2026.
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