BioMCP
PulseGate's liveness check found it on 3 Oct 2026; it is registered on GitHub and PyPI and has been in the index since 16 Jun 2026. How this is checked
BioMCP provides a unified command interface for querying and analyzing data from a wide range of biomedical sources. Designed for researchers, clinicians, and agents, the tool aims to streamline the process of accessing and cross-referencing biomedical information by consolidating searches, detail retrieval, and cross-entity pivots into a single workflow. It addresses the challenge of navigating multiple database sites, authentication schemes, and API documentation by…
Inferred · not functionally tested
Overview
5 featuresPurpose: Enabling efficient querying and analysis of biomedical databases via CLI and MCP server.
Inferred · not functionally tested
Audience: bioinformaticians and biomedical researchers
Inferred · not functionally tested
Functions: rag, data_extraction, analytics
Inferred · not functionally tested
Interfaces: API: unknown · MCP: indicated (inferred, not tested) · CLI: indicated (inferred, not tested) · Self-hosting: indicated (inferred, not tested)
Recorded constraints: pricing: open_source · license: MIT · platforms: CLI · deployment: cli, self_hosted
Constraint provenance is unknown; confirm requirements with the publisher.
Record sources: biomcp.org · github.com. These links do not verify the individual claims.
In the CLI tools & terminal space, BioMCP takes a focused approach. Inferred · not functionally tested: It focuses on enabling efficient querying and analysis of biomedical databases via CLI and MCP server. Inferred · not functionally tested: It is built as an open-source project for bioinformaticians and biomedical researchers. Basis unknown · not verified: The project is open source (MIT). Basis unknown · not verified: BioMCP is available on the command line, and it can be self-hosted.
Behind BioMCP is genomoncology, and it first shipped in 2025. The project is developed in the open on GitHub with 525 stars and 1.1k commits in the last 90 days. Inferred · not functionally tested: Key capabilities include biomedical database queries, CLI interface, and MCP server. Basis unknown · not verified: Catalogued interfaces include an MCP server.
Summary written by a language model from the project’s public pages.
Tasks: Inferred · not functionally tested
- Biomedical database queries
- CLI interface
- MCP server
- Gene-set enrichment
- Data analytics
Topics: Inferred · not functionally tested
Built with & integrations
- Cloudflare
- cf-ray header · cf-cache-status header
Trust & compliance
Indexing history
1What PulseGate has recorded for this listing
Frequently asked questions about BioMCP
- What is BioMCP?
- Inferred · not functionally tested: BioMCP focuses on enabling efficient querying and analysis of biomedical databases via CLI and MCP server. It is catalogued under CLI tools & terminal on PulseGate.
- Who should use BioMCP?
- Inferred · not functionally tested: BioMCP is an open-source project built for bioinformaticians and biomedical researchers.
- Does BioMCP have a free plan?
- Basis unknown · not verified: Yes — BioMCP is open source under the MIT license and free to use.
- What platforms does BioMCP run on?
- Basis unknown · not verified: BioMCP runs on the command line. It can also be self-hosted.
- Is BioMCP still active?
- PulseGate's liveness check found it on 3 Oct 2026. Its GitHub repository shows 1.1k commits in the last 90 days.
- What projects are similar to BioMCP?
- Similar projects tracked by PulseGate include BioMCP-TS, bio-agent-tools, and brapi-mcp-server.BioMCP-TSbio-agent-toolsbrapi-mcp-server
- Who makes BioMCP?
- BioMCP is developed by genomoncology.
- How long has BioMCP been around?
- BioMCP first shipped in 2025.
Similar projects
Closest matches by what these projects do