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pdbe

pipeworx.ioInfrastructure

No liveness check has reached it yet; it has been in the index since 10 Oct 2026. How this is checked

Pdbe is a hosted MCP and JSON-RPC server that exposes PDBe data through three tools. It provides PDB entry summaries, molecule and entity details, and SIFTS mappings between structures and UniProt accessions for developers and AI agents.

Inferred · not functionally tested

FreeWebAPICloud-managed
pdbe preview
Visit pipeworx.io

Overview

6 features

Purpose: Retrieving structured PDBe protein-structure data and UniProt mappings without manually querying multiple bioinformatics databases.

Inferred · not functionally tested

Audience: bioinformatics developers and AI agent builders

Inferred · not functionally tested

Functions: data_extraction

Inferred · not functionally tested

Interfaces: API: indicated (inferred, not tested) · MCP: indicated (inferred, not tested) · CLI: unknown · Self-hosting: unknown

Recorded constraints: pricing: free · license: Proprietary · platforms: WEB · deployment: browser, api_only, cloud_managed

Constraint provenance is unknown; confirm requirements with the publisher.

Record sources: gateway.pipeworx.io. These links do not verify the individual claims.

pdbe sits in PulseGate's API design, testing & docs category. Inferred · not functionally tested: It focuses on retrieving structured PDBe protein-structure data and UniProt mappings without manually querying multiple bioinformatics databases. Inferred · not functionally tested: pdbe is a B2B product aimed at bioinformatics developers and AI agent builders. Basis unknown · not verified: pdbe costs nothing to use. Basis unknown · not verified: It runs on the web and API.

Pipeworx builds and maintains pdbe. Inferred · not functionally tested: Key capabilities include PDB summaries, molecule listings, and uniProt mappings. Inferred · not functionally tested: Catalogued interfaces include an MCP server and a public API.

Summary written by a language model from the project’s public pages.

Tasks: Inferred · not functionally tested

  • PDB summaries
  • Molecule listings
  • UniProt mappings
  • JSON-RPC endpoint
  • MCP tools
  • TypeScript examples

Topics: Inferred · not functionally tested

Tags
protein-structure-datapdb-lookupuniprot-mappingmcp-server

JSON profile · Text profile · Access guide

Built with & integrations

Hosting
Cloudflare
Connectors
MCPAPI
Runs on
BrowserAPI-onlyCloud-managed
Detected from
Cloudflare
cf-ray header

Trust & compliance

Public signals
HTTPSFree tier

Indexing history

1

What PulseGate has recorded for this listing

  1. Indexed10 Oct · 00:02 UTC
    Pdbe seen via MCP Registry (official)
    Source: MCP Registry (official) · Open

Frequently asked questions about pdbe

What does pdbe do?
Inferred · not functionally tested: Pdbe focuses on retrieving structured PDBe protein-structure data and UniProt mappings without manually querying multiple bioinformatics databases. It is catalogued under API design, testing & docs on PulseGate.
Who should use pdbe?
Inferred · not functionally tested: pdbe is a B2B product built for bioinformatics developers and AI agent builders.
Is pdbe free?
Basis unknown · not verified: Yes — pdbe is free to use.
What platforms does pdbe run on?
Basis unknown · not verified: pdbe runs on the web and API.
Is pdbe still maintained?
Unverified. pdbe has not been re-checked since it entered the index, so there is no finding either way — and only a positive finding would say otherwise.
What projects are similar to pdbe?
Similar projects tracked by PulseGate include rcsb-pdb, bindingdb, and peeringdb.rcsb-pdbbindingdbpeeringdb
Who makes pdbe?
pdbe is developed by Pipeworx.
Does pdbe have an API or integrations?
Inferred · not functionally tested: Yes — pdbe exposes an MCP server and a public API.

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