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bindingdb

pipeworx.ioInfrastructure

PulseGate's liveness check found it on 24 Sep 2026; it has been in the index since 24 Sep 2026. How this is checked

BindingDB is exposed through a Pipeworx MCP server with tools for querying measured ligand affinities by UniProt target, compound SMILES, or PDB structure. It provides experimental medicinal-chemistry data for researchers and applications performing compound-to-target and potency lookups.

Inferred · not functionally tested

WebAPICloud-managed
bindingdb preview
Visit pipeworx.io

Overview

6 features

Purpose: Finding experimentally measured compound–protein binding affinities and target relationships from BindingDB data.

Inferred · not functionally tested

Audience: drug discovery researchers and bioinformatics developers

Inferred · not functionally tested

Functions: data_extraction

Inferred · not functionally tested

Interfaces: API: indicated (inferred, not tested) · MCP: indicated (inferred, not tested) · CLI: unknown · Self-hosting: unknown

Recorded constraints: pricing: unknown · license: Proprietary · platforms: WEB · deployment: browser, api_only, cloud_managed

Constraint provenance is unknown; confirm requirements with the publisher.

Record sources: gateway.pipeworx.io. These links do not verify the individual claims.

bindingdb is an API design, testing & docs project. Inferred · not functionally tested: It focuses on finding experimentally measured compound–protein binding affinities and target relationships from BindingDB data. Inferred · not functionally tested: bindingdb is a B2B product aimed at drug discovery researchers and bioinformatics developers. Basis unknown · not verified: It ships for the web and API.

Behind bindingdb is Pipeworx. Inferred · not functionally tested: Key capabilities include uniProt affinity lookup, SMILES target lookup, and PDB affinity lookup. Inferred · not functionally tested: Catalogued interfaces include an MCP server and a public API.

Summary written by a language model from the project’s public pages.

Tasks: Inferred · not functionally tested

  • UniProt affinity lookup
  • SMILES target lookup
  • PDB affinity lookup
  • Ki and Kd values
  • IC50 and EC50 values
  • PubMed references

Topics: Inferred · not functionally tested

Tags
binding-affinitydrug-discoveryprotein-targetsmedicinal-chemistry

JSON profile · Text profile · Access guide

Built with & integrations

Hosting
Cloudflare
Connectors
MCPAPI
Runs on
BrowserAPI-onlyCloud-managed
Detected from
Cloudflare
cf-ray header

Trust & compliance

Public signals
HTTPS

Indexing history

1

What PulseGate has recorded for this listing

  1. Indexed24 Sep · 22:19 UTC
    Bindingdb seen via MCP Registry (official)
    Source: MCP Registry (official) · Open

Frequently asked questions about bindingdb

What is bindingdb?
Inferred · not functionally tested: Bindingdb focuses on finding experimentally measured compound–protein binding affinities and target relationships from BindingDB data. It is catalogued under API design, testing & docs on PulseGate.
Who is bindingdb for?
Inferred · not functionally tested: bindingdb is a B2B product built for drug discovery researchers and bioinformatics developers.
What platforms does bindingdb run on?
Basis unknown · not verified: bindingdb runs on the web and API.
Is bindingdb still active?
PulseGate's liveness check found it on 24 Sep 2026.
What are alternatives to bindingdb?
Similar projects tracked by PulseGate include drugbank, mcp-pykingenie, and chembl.drugbankmcp-pykingeniechembl
Who develops bindingdb?
bindingdb is developed by Pipeworx.
Does bindingdb have an API or integrations?
Inferred · not functionally tested: Yes — bindingdb exposes an MCP server and a public API.

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