bio-agent-tools
PulseGate's liveness check found it on 5 Oct 2026; it is registered on GitHub and PyPI and has been in the index since 5 Sep 2026. How this is checked
bio-agent-tools is an open-source MCP server that exposes Crispex, Perturbio, and Bindigo as tools for AI agents. It is intended for developers building agent workflows involving CRISPR, molecular docking, and single-cell bioinformatics.
Inferred · not functionally tested
Overview
5 featuresPurpose: Giving AI agents programmatic access to CRISPR, molecular docking, and single-cell bioinformatics tools.
Inferred · not functionally tested
Audience: bioinformatics developers and AI agent builders
Inferred · not functionally tested
Functions: agents, data_extraction
Inferred · not functionally tested
Interfaces: API: indicated (inferred, not tested) · MCP: indicated (inferred, not tested) · CLI: indicated (inferred, not tested) · Self-hosting: indicated (inferred, not tested)
Recorded constraints: pricing: open_source · license: MIT · platforms: CLI · deployment: cli, self_hosted, api_only
Constraint provenance is unknown; confirm requirements with the publisher.
Record sources: pypi.org · github.com. These links do not verify the individual claims.
In the Frameworks & runtimes space, bio-agent-tools takes a focused approach. Inferred · not functionally tested: It focuses on giving AI agents programmatic access to CRISPR, molecular docking, and single-cell bioinformatics tools. Inferred · not functionally tested: bio-agent-tools is an open-source project aimed at bioinformatics developers and AI agent builders. Basis unknown · not verified: bio-agent-tools is open source under the MIT license. Basis unknown · not verified: bio-agent-tools is available on the command line and API, and it can be self-hosted.
It is developed by Siavash Ghaffari, and it first shipped in 2026. Development happens publicly on GitHub with 3 commits in the last 90 days. Inferred · not functionally tested: Key capabilities include MCP server, CRISPR tools, and molecular docking. Inferred · not functionally tested: Catalogued interfaces include an MCP server.
Summary written by a language model from the project’s public pages.
Tasks: Inferred · not functionally tested
- MCP server
- CRISPR tools
- Molecular docking
- Single-cell analysis
- Agent tools
Topics: Inferred · not functionally tested
Built with & integrations
Trust & compliance
Indexing history
1What PulseGate has recorded for this listing
- Indexed5 Sep · 03:28 UTCbio-agent-tools seen via PyPI Bulk EnumeratorSource: PyPI Bulk Enumerator · Open
Frequently asked questions about bio-agent-tools
- What is bio-agent-tools?
- Inferred · not functionally tested: Bio-agent-tools focuses on giving AI agents programmatic access to CRISPR, molecular docking, and single-cell bioinformatics tools. It is catalogued under Frameworks & runtimes on PulseGate.
- Who is bio-agent-tools for?
- Inferred · not functionally tested: bio-agent-tools is an open-source project built for bioinformatics developers and AI agent builders.
- Does bio-agent-tools have a free plan?
- Basis unknown · not verified: Yes — bio-agent-tools is open source under the MIT license and free to use.
- What platforms does bio-agent-tools run on?
- Basis unknown · not verified: bio-agent-tools runs on the command line and API. It can also be self-hosted.
- Is bio-agent-tools still maintained?
- PulseGate's liveness check found it on 5 Oct 2026. Its GitHub repository shows 3 commits in the last 90 days.
- What projects are similar to bio-agent-tools?
- Similar projects tracked by PulseGate include abi-agent, agent-borg, and agent-brain-ag-mcp.abi-agentagent-borgagent-brain-ag-mcp
- Who develops bio-agent-tools?
- bio-agent-tools is developed by Siavash Ghaffari.
- How long has bio-agent-tools been around?
- bio-agent-tools first shipped in 2026.
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