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bio-agent-tools

PyPIInfrastructure

PulseGate's liveness check found it on 5 Oct 2026; it is registered on GitHub and PyPI and has been in the index since 5 Sep 2026. How this is checked

bio-agent-tools is an open-source MCP server that exposes Crispex, Perturbio, and Bindigo as tools for AI agents. It is intended for developers building agent workflows involving CRISPR, molecular docking, and single-cell bioinformatics.

Inferred · not functionally tested

Open SourceMITCLISelf-hostedAPI
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Overview

5 features

Purpose: Giving AI agents programmatic access to CRISPR, molecular docking, and single-cell bioinformatics tools.

Inferred · not functionally tested

Audience: bioinformatics developers and AI agent builders

Inferred · not functionally tested

Functions: agents, data_extraction

Inferred · not functionally tested

Interfaces: API: indicated (inferred, not tested) · MCP: indicated (inferred, not tested) · CLI: indicated (inferred, not tested) · Self-hosting: indicated (inferred, not tested)

Recorded constraints: pricing: open_source · license: MIT · platforms: CLI · deployment: cli, self_hosted, api_only

Constraint provenance is unknown; confirm requirements with the publisher.

Record sources: pypi.org · github.com. These links do not verify the individual claims.

In the Frameworks & runtimes space, bio-agent-tools takes a focused approach. Inferred · not functionally tested: It focuses on giving AI agents programmatic access to CRISPR, molecular docking, and single-cell bioinformatics tools. Inferred · not functionally tested: bio-agent-tools is an open-source project aimed at bioinformatics developers and AI agent builders. Basis unknown · not verified: bio-agent-tools is open source under the MIT license. Basis unknown · not verified: bio-agent-tools is available on the command line and API, and it can be self-hosted.

It is developed by Siavash Ghaffari, and it first shipped in 2026. Development happens publicly on GitHub with 3 commits in the last 90 days. Inferred · not functionally tested: Key capabilities include MCP server, CRISPR tools, and molecular docking. Inferred · not functionally tested: Catalogued interfaces include an MCP server.

Summary written by a language model from the project’s public pages.

Tasks: Inferred · not functionally tested

  • MCP server
  • CRISPR tools
  • Molecular docking
  • Single-cell analysis
  • Agent tools

Topics: Inferred · not functionally tested

Tags
mcp-serverbioinformaticscrispr-analysismolecular-dockingsingle-cell
AI capabilities
Structured
Inference: Cloud API

JSON profile · Text profile · Access guide

Built with & integrations

Connectors
MCPgithub
Runs on
CLISelf-hostedAPI-only

Trust & compliance

License
MIT
Public signals
HTTPSOpen SourceGitHubActive maintenance

Indexing history

1

What PulseGate has recorded for this listing

  1. Indexed5 Sep · 03:28 UTC
    bio-agent-tools seen via PyPI Bulk Enumerator
    Source: PyPI Bulk Enumerator · Open

Frequently asked questions about bio-agent-tools

What is bio-agent-tools?
Inferred · not functionally tested: Bio-agent-tools focuses on giving AI agents programmatic access to CRISPR, molecular docking, and single-cell bioinformatics tools. It is catalogued under Frameworks & runtimes on PulseGate.
Who is bio-agent-tools for?
Inferred · not functionally tested: bio-agent-tools is an open-source project built for bioinformatics developers and AI agent builders.
Does bio-agent-tools have a free plan?
Basis unknown · not verified: Yes — bio-agent-tools is open source under the MIT license and free to use.
What platforms does bio-agent-tools run on?
Basis unknown · not verified: bio-agent-tools runs on the command line and API. It can also be self-hosted.
Is bio-agent-tools still maintained?
PulseGate's liveness check found it on 5 Oct 2026. Its GitHub repository shows 3 commits in the last 90 days.
What projects are similar to bio-agent-tools?
Similar projects tracked by PulseGate include abi-agent, agent-borg, and agent-brain-ag-mcp.abi-agentagent-borgagent-brain-ag-mcp
Who develops bio-agent-tools?
bio-agent-tools is developed by Siavash Ghaffari.
How long has bio-agent-tools been around?
bio-agent-tools first shipped in 2026.

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