PulseGatePost-LLM software, agents & workflows market (since 2022)
Coverage
166,746

Apps indexed

 

Freshness
46 min ago

Last update

 

Cadence
1,438/day

7-day average

Indexed today: 552

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vmd-hydrate-mcp
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vmd-hydrate-mcp

pypi.org·Infrastructure

vmd-hydrate-mcp is an open-source MCP server that automates VMD for GROMACS and LAMMPS trajectory analysis, scripted rendering, and clathrate-hydrate cage science. It enables computational chemists to perform advanced H-bond network analysis and order parameter calculations in molecular dynamics workflows.

Open SourceMIT
CLIAPISelf-hosted
V
Visit PyPI↗

Overview

10 features
  • ✓Trajectory analysis
  • ✓Scripted rendering
  • ✓H-bond network analysis
  • ✓Order parameter calculation
  • ✓VMD automation
  • ✓Clathrate-hydrate support
  • ✓GROMACS integration
  • ✓LAMMPS integration
  • ✓MCP server
  • ✓Self-hosted deployment

Tags

molecular-dynamicstrajectory-analysisvmd-integrationclathrate-hydratemcp-server

Built with & integrations

Connectors
MCPAPI
Runs on
CLIAPI-onlySelf-hosted

Trust & compliance

LicenseMIT
Verified signals
✓ HTTPS✓ Open Source✓ Free tier✓ GitHub✓ Active maintenance

Recent events

Latest indexed changes and source events

  1. IndexedJul 2, 9:12 PM

    vmd-hydrate-mcp discovered by the PulseGate indexer

    Source: PulseGate indexerOpen ↗

At a glance

Platforms
Cli
Languages
English
Open source
Yes (GitHub)
License
MIT
First seen
Jul 2, 2026
Activity
🟢 Active
Status
🟢 Active
Built for
computational chemists
Model
Open source
Solves
Automating and scaling molecular dynamics trajectory analysis and visualization using VMD for scientific research.

Developer

Wjgoarxiv
Solo developer
↗ GitHub

Open source

View on GitHub →
⭐ Stars
0
🍴 Forks
0
Open issues
0
Last commit
1w ago
Commits 90d
2
Contributors
1
Authorship
Solo
Default branch
main
Latest release
v0.1.0 · 1w ago

PulseGate index

Confidence
Low · 64
Indexed
Jul 2, 2026
Lifecycle
Alive
Activity
Active
First seen
Jul 2026
Last seen
1w ago
Freshness
Unknown
Identity audit (9)
Entity ID
cmr4035wj00j8zkk5wnofdohl
Slug
vmd-hydrate-mcp-pypi-org
Verification state
Indexed for public listing
Claim / listing state
Unclaimed · listed: yes
Index status
Included in index
Latest evidence snapshot
Jul 2, 2026
Timeline basis
Indexed-at chronology (no inferred launch/funding milestones).
Last updated
Jul 2, 2026
Canonical URL
https://pypi.org/project/vmd-hydrate-mcp

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