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vmd-hydrate-mcp

PyPIInfrastructure

PulseGate's liveness check found it on 14 Sep 2026; it is registered on GitHub and PyPI and has been in the index since 2 Jul 2026. How this is checked

vmd-hydrate-mcp is an open-source MCP server that automates VMD for GROMACS and LAMMPS trajectory analysis, scripted rendering, and clathrate-hydrate cage science. It enables computational chemists to perform advanced H-bond network analysis and order parameter calculations in molecular dynamics workflows.

Inferred · not functionally tested

Open SourceMITCLIAPISelf-hosted
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Overview

6 features

Purpose: Automating and scaling molecular dynamics trajectory analysis and visualization using VMD for scientific research.

Inferred · not functionally tested

Audience: computational chemists

Inferred · not functionally tested

Functions: data_extraction, workflow_automation

Inferred · not functionally tested

Interfaces: API: indicated (inferred, not tested) · MCP: indicated (inferred, not tested) · CLI: indicated (inferred, not tested) · Self-hosting: indicated (inferred, not tested)

Recorded constraints: pricing: open_source · license: MIT · platforms: CLI · deployment: cli, api_only, self_hosted

Constraint provenance is unknown; confirm requirements with the publisher.

Record sources: pypi.org · github.com. These links do not verify the individual claims.

vmd-hydrate-mcp sits in PulseGate's Frameworks & SDKs category. Inferred · not functionally tested: It focuses on automating and scaling molecular dynamics trajectory analysis and visualization using VMD for scientific research. Inferred · not functionally tested: It is built as an open-source project for computational chemists. Basis unknown · not verified: The project is open source (MIT). Basis unknown · not verified: It ships for the command line and API, and it can be self-hosted.

vmd-hydrate-mcp first shipped in 2026. Development happens publicly on GitHub with 2 commits in the last 90 days. Inferred · not functionally tested: Key capabilities include trajectory analysis, scripted rendering, and H-bond network analysis. Inferred · not functionally tested: Catalogued interfaces include an MCP server and a public API.

Summary written by a language model from the project’s public pages.

Tasks: Inferred · not functionally tested

  • Trajectory analysis
  • Scripted rendering
  • H-bond network analysis
  • Order parameter calculation
  • VMD automation
  • Clathrate-hydrate support

Topics: Inferred · not functionally tested

Tags
molecular-dynamicstrajectory-analysisvmd-integrationclathrate-hydratemcp-server

JSON profile · Text profile · Access guide

Built with & integrations

Connectors
MCPAPI
Runs on
CLIAPI-onlySelf-hosted

Trust & compliance

License
MIT
Public signals
HTTPSOpen SourceFree tierGitHubActive maintenance

Indexing history

What PulseGate has recorded for this listing

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Frequently asked questions about vmd-hydrate-mcp

What is vmd-hydrate-mcp?
Inferred · not functionally tested: Vmd-hydrate-mcp focuses on automating and scaling molecular dynamics trajectory analysis and visualization using VMD for scientific research. It is catalogued under Frameworks & SDKs on PulseGate.
Who should use vmd-hydrate-mcp?
Inferred · not functionally tested: vmd-hydrate-mcp is an open-source project built for computational chemists.
Does vmd-hydrate-mcp have a free plan?
Basis unknown · not verified: Yes — vmd-hydrate-mcp is open source under the MIT license and free to use.
What platforms does vmd-hydrate-mcp run on?
Basis unknown · not verified: vmd-hydrate-mcp runs on the command line and API. It can also be self-hosted.
Is vmd-hydrate-mcp still maintained?
PulseGate's liveness check found it on 14 Sep 2026. Its GitHub repository shows 2 commits in the last 90 days.
When did vmd-hydrate-mcp launch?
vmd-hydrate-mcp first shipped in 2026.
Is vmd-hydrate-mcp open source?
Basis unknown · not verified: Yes — vmd-hydrate-mcp is open source under the MIT license, developed on GitHub.
Does vmd-hydrate-mcp have an API or integrations?
Inferred · not functionally tested: Yes — vmd-hydrate-mcp exposes an MCP server and a public API.

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