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Welcome to pdb_cpp’s documentation!
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WTWelcome to pdb_cpp’s documentation! logo

Welcome to pdb_cpp’s documentation!

readthedocs.io·Infrastructure

pdb_cpp is an open-source structural bioinformatics toolkit featuring a C++ core and Python API for fast parsing and analysis of PDB and mmCIF files. It supports atom selection, sequence and structural alignment, TM-score, DockQ evaluation, and various utilities for protein structure research.

Open SourceGPL-2.0
CLIAPI
W
Welcome to pdb_cpp’s documentation! preview
Visit readthedocs.io↗
⭐3
stars
✓9
features
📅2025
since

Overview

9 features
  • ✓PDB parsing
  • ✓mmCIF parsing
  • ✓Atom selection
  • ✓Sequence alignment
  • ✓Structural alignment
  • ✓TM-score evaluation
  • ✓DockQ scoring
  • ✓Hydrogen bond detection
  • ✓Geometry utilities

Tags

bioinformatics-toolkitpdb-parserstructure-alignmentprotein-analysis

AI capabilities

Weights: Open

Built with & integrations

Hosting
cloudflare
Runs on
CLIAPI-only

Trust & compliance

LicenseGPL-2.0
Verified signals
✓ HTTPS✓ Open Source✓ Free tier✓ GitHub · ★ 3✓ Active maintenance

Recent events

Latest indexed changes and source events

  1. IndexedJun 26, 10:10 AM

    readthedocs.io discovered by the PulseGate indexer

    Source: PulseGate indexerOpen ↗

At a glance

Platforms
Cli · Api
Languages
English
Open source
Yes · ★ 3
License
GPL-2.0
First seen
Aug 19, 2025
Activity
🟢 Active
Status
🟢 Active
Built for
bioinformatics researchers and developers
Model
Open source
Solves
Parsing and analyzing protein structure files efficiently for bioinformatics research.

Developer

Samuelmurail
Solo developer
↗ GitHub

Open source

View on GitHub →
⭐ Stars
3
🍴 Forks
0
Open issues
0
Last commit
3w ago
Commits 90d
50
Contributors
1
Authorship
Solo
Default branch
main

PulseGate index

Confidence
High · 94
Indexed
Jun 26, 2026
Lifecycle
Alive
Activity
Active
First seen
Aug 2025
Last seen
2w ago
Freshness
Unknown
Identity audit (9)
Entity ID
cmquruex7077nkhgovhwzy7m7
Slug
pdb-cpp-readthedocs-io
Verification state
Indexed for public listing
Claim / listing state
Unclaimed · listed: yes
Index status
Included in index
Latest evidence snapshot
Jun 26, 2026
Timeline basis
Indexed-at chronology (no inferred launch/funding milestones).
Last updated
Jun 26, 2026
Canonical URL
https://pdb-cpp.readthedocs.io/en/latest

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