fiji-mcp-server
Model Context Protocol (MCP) server for Fiji/ImageJ: macros, discovery, screenshots, and workflows via PyImageJ
Overview
5 featuresfiji-mcp-server sits in PulseGate's Infrastructure & Backend category. It focuses on automating and extending Fiji/ImageJ workflows with a programmable MCP server interface. fiji-mcp-server is an open-source project aimed at microscopy researchers. fiji-mcp-server is open source under the BSD-3-Clause license. It runs on the web and the command line.
It is developed by surajinacademia, and it first shipped in 2026. The project is developed in the open on GitHub with 24 commits in the last 90 days. Key capabilities include MCP server, macro support, and workflow automation. It exposes integrations via an MCP server.
- MCP server
- Macro support
- Workflow automation
- Screenshot capture
- ImageJ integration
Built with & integrations
Trust & compliance
Indexing history
1What PulseGate has recorded for this listing
Frequently asked questions about fiji-mcp-server
- What is fiji-mcp-server?
- Fiji-mcp-server focuses on automating and extending Fiji/ImageJ workflows with a programmable MCP server interface. It is catalogued under Infrastructure & Backend on PulseGate.
- Who is fiji-mcp-server for?
- fiji-mcp-server is an open-source project built for microscopy researchers.
- Is fiji-mcp-server free?
- Yes — fiji-mcp-server is open source under the BSD-3-Clause license and free to use.
- What platforms does fiji-mcp-server run on?
- fiji-mcp-server runs on the web and the command line.
- Is fiji-mcp-server still maintained?
- The GitHub repository shows 24 commits in the last 90 days.
- Who makes fiji-mcp-server?
- fiji-mcp-server is developed by surajinacademia.
- When did fiji-mcp-server launch?
- fiji-mcp-server first shipped in 2026.
- Is fiji-mcp-server open source?
- Yes — fiji-mcp-server is open source under the BSD-3-Clause license, developed on GitHub.
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