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Smoldyn

smoldyn.org·Infrastructure

Smoldyn is an open-source, particle-based biochemical simulator designed for research and educational purposes. It enables users to model and visualize complex biochemical systems in three dimensions, supporting scripting and cross-platform operation.

Open Source
WebCLIWindowsmacOSLinux
S
Smoldyn preview
Visit smoldyn.org↗

Overview

5 features

Smoldyn is an Other infrastructure product. It facilitates simulation of biochemical systems at the particle level for researchers and educators. It is built as an open-source project for biological researchers and educators. Smoldyn is open source under the Open Source license. The product ships for the web, the command line, Windows, macOS, and Linux.

Key capabilities include particle-based simulation, biochemical modeling, and 3D visualization.

  • ✓Particle-based simulation
  • ✓Biochemical modeling
  • ✓3D visualization
  • ✓Scripting support
  • ✓Cross-platform

Tags

biochemical-simulationparticle-modelingscientific-software3d-visualizationcross-platform

AI capabilities

Weights: Open

Built with & integrations

Runs on
BrowserCLIWindowsmacOSLinux

Trust & compliance

LicenseOpen Source
Verified signals
✓ HTTPS✓ Open Source✓ Free tier

Recent events

Latest indexed changes and source events

  1. IndexedJun 16, 4:32 AM

    Listing verified by the PulseGate indexer

    Source: PulseGate indexerOpen ↗

Frequently asked questions about Smoldyn

What does Smoldyn do?
Smoldyn facilitates simulation of biochemical systems at the particle level for researchers and educators. It is catalogued under Other infrastructure on PulseGate.
Who is Smoldyn for?
Smoldyn is an open-source project built for biological researchers and educators.
Is Smoldyn free?
Yes — Smoldyn is open source under the Open Source license and free to use.
What platforms does Smoldyn run on?
Smoldyn runs on the web, the command line, Windows, macOS, and Linux.
Is Smoldyn still maintained?
PulseGate's automated liveness checks currently classify Smoldyn as active.
What are alternatives to Smoldyn?
Similar tools tracked by PulseGate include Moldetr, DWSIM, and moled.MoldetrDWSIMmoled
Is Smoldyn open source?
Yes — Smoldyn is open source under the Open Source license.

At a glance

Platforms
Cli · Web
Languages
English
License
Open Source
First seen
Feb 6, 2026
Activity
🟢 Active
Status
🟢 Active
Built for
biological researchers and educators
Model
Open source
Solves
Facilitates simulation of biochemical systems at the particle level for researchers and educators.

Developer

Smoldyn

Live coverage

Confidence
Medium · 71
Indexed
Jun 16, 2026
Lifecycle
Alive
Activity
Active
First seen
Feb 2026
Last seen
4w ago
Identity audit (9)
Entity ID
cmqg5fg1i066n8xbmxom8pth7
Slug
smoldyn-org-smoldyn-org
Verification state
Indexed for public listing
Claim / listing state
Unclaimed · listed: yes
Index status
Included in index
Latest evidence snapshot
Jun 16, 2026
Timeline basis
Indexed-at chronology (no inferred launch/funding milestones).
Last updated
Jul 12, 2026
Canonical URL
https://smoldyn.org/

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