isoquant is an open-source command-line tool for reference-based analysis and quantification of long RNA reads, supporting technologies like nanopore and pacbio. It is designed for bioinformatics researchers working with transcriptomics and single-cell data.
isoquant sits in PulseGate's Other dev tools category. It automates the analysis and quantification of long RNA reads for bioinformatics research. isoquant is an open-source project aimed at bioinformatics researchers. The project is open source (GPL-2.0-only). isoquant is available on the web and the command line.
ablab builds and maintains isoquant, and the product first shipped in 2020. The project is developed in the open on GitHub with 229 stars and 80 commits in the last 90 days. Across PulseGate's embedding index, isoquant has few near neighbours, marking it as relatively distinct. Among its 4 catalogued features are Long RNA read analysis, reference-based quantification, and bioinformatics workflow.
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