genome-uploader is an open-source Python script designed to streamline the process of uploading bins and metagenome-assembled genomes (MAGs) in fasta format to the European Nucleotide Archive (ENA). It generates the required XML and manifest files for submission using webin-cli, making it easier for bioinformatics researchers to submit their data.
genome-uploader is a Frameworks & SDKs product. It focuses on automating the submission of metagenomic data to the European Nucleotide Archive for bioinformatics workflows. genome-uploader is an open-source project aimed at bioinformatics researchers. The project is open source (Apache Software License 2.0). genome-uploader is available on the command line.
genome-uploader first shipped in 2024. Among its 5 catalogued features are FASTA upload, XML generation, and manifest creation.
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