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CodonAdaptPy
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CodonAdaptPy

PyPI·Infrastructure

CodonAdaptPy is a Python library for codon usage analysis, host adaptation, evolutionary studies, phylogenetics, and sequence optimization. It enables researchers to calculate metrics like CAI, adapt sequences for better expression in target organisms, and perform bioinformatics tasks related to codon bias and phylogenetics. Primarily used via Python scripts or as a CLI tool by developers and scientists working in synthetic biology and computational genomics.

Open SourceGPL-3.0-or-later
CLIAPI
C
Visit PyPI↗
🍴1
fork
✓5
features
📅2026
since

Overview

5 features

In the Developer Tools space, CodonAdaptPy takes a focused approach. It focuses on analyzing codon usage bias and optimizing DNA sequences for expression in heterologous hosts without manual bioinformatics scripting. It is built as an open-source project for bioinformaticians and computational biologists. CodonAdaptPy is open source under the GPL-3.0-or-later license. The product ships for the command line and API.

Behind CodonAdaptPy is Navduhan, and the product first shipped in 2026. Development happens publicly on GitHub with 10 commits in the last 90 days. Key capabilities include Codon Usage Analysis, Host Adaptation, and Sequence Optimization.

  • ✓Codon Usage Analysis
  • ✓Host Adaptation
  • ✓Sequence Optimization
  • ✓CAI Calculation
  • ✓Phylogenetic Tools

Tags

codon-optimizationsequence-designhost-adaptationcai-calculationphylogenetic-analysis

Built with & integrations

Runs on
CLIAPI-only

Trust & compliance

LicenseGPL-3.0-or-later
Verified signals
✓ HTTPS✓ Open Source✓ GitHub✓ Active maintenance

Recent events

Latest indexed changes and source events

  1. IndexedJul 22, 9:41 PM

    CodonAdaptPy verified by the PulseGate indexer

    Source: PulseGate indexerOpen ↗

Frequently asked questions about CodonAdaptPy

What does CodonAdaptPy do?
CodonAdaptPy focuses on analyzing codon usage bias and optimizing DNA sequences for expression in heterologous hosts without manual bioinformatics scripting. It is catalogued under Developer Tools on PulseGate.
Who is CodonAdaptPy for?
CodonAdaptPy is an open-source project built for bioinformaticians and computational biologists.
Is CodonAdaptPy free?
Yes — CodonAdaptPy is open source under the GPL-3.0-or-later license and free to use.
What platforms does CodonAdaptPy run on?
CodonAdaptPy runs on the command line and API.
Is CodonAdaptPy still maintained?
PulseGate's liveness checks currently classify CodonAdaptPy as active. The GitHub repository shows 10 commits in the last 90 days.
What are alternatives to CodonAdaptPy?
Similar tools tracked by PulseGate include cutadapt-folitools, adaptiseq, and yadopt.cutadapt-folitoolsadaptiseqyadopt
Who makes CodonAdaptPy?
CodonAdaptPy is developed by Navduhan.
When did CodonAdaptPy launch?
CodonAdaptPy first shipped in 2026.

At a glance

Platforms
Cli
Languages
English
Open source
Yes (GitHub)
License
GPL-3.0-or-later
First seen
Jul 22, 2026
Activity
🟢 Active
Status
🟢 Active
Built for
bioinformaticians and computational biologists
Model
Open source
Solves
Analyzing codon usage bias and optimizing DNA sequences for expression in heterologous hosts without manual bioinformatics scripting.

Developer

Navduhan
Solo developer
↗ GitHub

Open source

View on GitHub →
⭐ Stars
0
🍴 Forks
1
Open issues
0
Last commit
6d ago
Commits 90d
10
Contributors
1
Authorship
Solo
Default branch
main
Latest release
v1.0.1 · 6d ago

Live coverage

Confidence
Low · 64
Indexed
Jul 22, 2026
Lifecycle
Alive
Activity
Active
First seen
Jul 2026
Last seen
6d ago
Identity audit (10)
Entity ID
cmrwly7210069cjytmq0ccny8
Slug
codonadaptpy-pypi-org
Lifecycle last checked
Jul 22, 2026
Verification state
Indexed for public listing
Claim / listing state
Unclaimed · listed: yes
Index status
Included in index
Latest evidence snapshot
Jul 22, 2026
Timeline basis
Indexed-at chronology (no inferred launch/funding milestones).
Last updated
Jul 22, 2026
Canonical URL
https://pypi.org/project/CodonAdaptPy

Similar apps

Other apps tracked under the same category.

  • cutadapt-folitools
    pypi.org
  • adaptiseq
    pypi.org
  • yadopt
    pypi.org
  • OpenAdapt
    openadapt.ai
  • aprovan-cicadas
    github.com
  • apex-coder
    pypi.org