Who should use barcodesdb?

barcodesdb is an open-source project built for bioinformaticians and genomics researchers.

Yes — barcodesdb is open source under the MIT license and free to use.

What platforms does barcodesdb run on?

barcodesdb runs on the command line and API.

Is barcodesdb still active?

The GitHub repository shows 2 commits in the last 90 days.

What projects are similar to barcodesdb?

Similar projects tracked by PulseGate include MFGLib documentation, MOMENT 1 Small, and isolation-forest-onnx.

Who develops barcodesdb?

barcodesdb is developed by Georgakopoulos-Soares-lab.

When did barcodesdb launch?

barcodesdb first shipped in 2026.

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barcodesdb

Name: barcodesdb
Author: Georgakopoulos-Soares-lab

PyPIInfrastructure

barcodesdb is a bioinformatics tool that finds DNA barcodes absent from any genome, metagenome, or read collection chosen by the user. It leverages k-mer analysis and sequence design techniques for genomics and metagenomics research. The package is MIT-licensed and available on PyPI.

Open SourceMITCLIAPI

Visit PyPI

Overview

3 features

In the Data science & ML workbench space, barcodesdb takes a focused approach. It focuses on identifying DNA barcodes that do not appear in any selected genome, metagenome, or read collection. It is built as an open-source project for bioinformaticians and genomics researchers. barcodesdb is open source under the MIT license. It ships for the command line and API.

Behind barcodesdb is Georgakopoulos-Soares-lab, and it first shipped in 2026. The project is developed in the open on GitHub with 2 commits in the last 90 days. Key capabilities include barcode discovery, K-mer analysis, and metagenomics support.

Summary written by a language model from the project’s public pages.

Barcode discovery
K-mer analysis
Metagenomics support

Built with & integrations

Runs on

CLIAPI-only

Trust & compliance

License

MIT

Verified signals

HTTPSOpen Source GitHubActive maintenance

Indexing history

What PulseGate has recorded for this listing

Indexed5 Aug · 13:50 UTC
barcodesdb verified against its public source
Source: PulseGate · Open

Frequently asked questions about barcodesdb

What is barcodesdb?: Barcodesdb focuses on identifying DNA barcodes that do not appear in any selected genome, metagenome, or read collection. It is catalogued under Data science & ML workbench on PulseGate.
Who should use barcodesdb?: barcodesdb is an open-source project built for bioinformaticians and genomics researchers.
Is barcodesdb free?: Yes — barcodesdb is open source under the MIT license and free to use.
What platforms does barcodesdb run on?: barcodesdb runs on the command line and API.
Is barcodesdb still active?: The GitHub repository shows 2 commits in the last 90 days.
What projects are similar to barcodesdb?: Similar projects tracked by PulseGate include MFGLib documentation, MOMENT 1 Small, and isolation-forest-onnx.MFGLib documentation MOMENT 1 Small isolation-forest-onnx
Who develops barcodesdb?: barcodesdb is developed by Georgakopoulos-Soares-lab.
When did barcodesdb launch?: barcodesdb first shipped in 2026.

At a glance

Platforms: Cli
Languages: English
Open source: Yes (GitHub)
License: MIT
First seen: 5 Aug 2026
Built for: Bioinformaticians and genomics researchers
Model: Open source
Solves: Identifying DNA barcodes that do not appear in any selected genome, metagenome, or read collection.

Registered as

GitHub: Georgakopoulos-Soares-lab/barcodes_extraction
PyPI: barcodesdb

Developer

Georgakopoulos-Soares-lab

Small team

GitHub

Open source

View on GitHub

Stars: 0
Forks: 0
Open issues: 0
Last commit: 5 Aug 2026
Commits 90d: 2
Contributors: 4
Authorship: Small team
Default branch: main

Index record

Identity confidence: Low · 64
Indexed: 5 Aug 2026
Lifecycle: Alive
First seen: Aug 2026
Last seen: 5 Aug 2026

Identity audit (13)

Slug: barcodesdb-pypi-org
Lifecycle state recorded: 5 Aug 2026
Verification state: Indexed for public listing
Listing state: Listed: yes
Index status: Included in index
Latest evidence snapshot: 5 Aug 2026
Timeline basis: Indexed-at chronology (no inferred launch/funding milestones).
Name from: Written by a language model from the project's public pages.
Category from: Assigned by a language model.
Summary from: Written by a language model from public pages.
Languages from: Detected by a language model from page content.
Last updated: 5 Aug 2026
Canonical URL: https://pypi.org/project/barcodesdb

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